fitMuDisp: Coordinate mean and dispersion parameter co-estimation step

Description Usage Arguments Value Author(s) See Also

Description

Auxillary function that calls the estimation functions for the different mean and dispersion models according to their needs. Note that one function has to be coded for each combination of mean and dispersion models.

Usage

1
2

Arguments

matCountsProc

(matrix genes x cells) Observed read counts, not observed are NA.

vecNormConst

(numeric vector number of cells) Model scaling factors, one per cell.

lsMuModel

(list) Object containing description of gene-wise mean parameter models.

lsDispModel

(list) Object containing description of gene-wise dispersion parameter models.

lsDropModel

(list) Object containing description of cell-wise drop-out parameter models.

matWeights

(numeric matrix cells x mixtures) [Default NULL] Assignments of cells to mixtures (for strMuModel="MM").

Value

list

Author(s)

David Sebastian Fischer

See Also

Called by fitModel. Calls fitting wrappers: fitImpulseZINB, fitContinuousZINB.


YosefLab/LineagePulse documentation built on May 6, 2019, 2:19 p.m.