fitPi: Global wrapper for fitting of all drop-out models

Description Usage Arguments Value Author(s) See Also

Description

This function fits all drop-out models required on this data set.

Usage

1
fitPi(matCounts, lsMuModel, lsDispModel, lsDropModel)

Arguments

matCounts

(count matrix genes x cells) Observed read counts, not observed are NA.

lsMuModel

(list) Object containing description of gene-wise mean parameter models.

lsDispModel

(list) Object containing description of gene-wise dispersion parameter models.

lsDropModel

(list) Object containing description of cell-wise drop-out parameter models.

Value

vecLinModel (numeric vector length linear model) Linear model for drop-out rate in logit space for given cell.

Author(s)

David Sebastian Fischer

See Also

Called by ZINB fitting wrapper fitModel. Calls optim wrapper fitPi_ManyCells or fitPi_SingleCell.


YosefLab/LineagePulse documentation built on May 6, 2019, 2:19 p.m.