API for YosefLab/LineagePulse
Differential expression analysis and model fitting for single-cell RNA-seq data

Global functions
$,LineagePulseObject-method Man page
LPsetters Man page
LineagePulse Man page
LineagePulseObject-class Man page
[[,LineagePulseObject,character,missing-method Man page
`boolFixedPopulation<-` Man page
`dfAnnotationProc<-` Man page
`dfResults<-` Man page
`lsDispModelConst<-` Man page
`lsDispModelH0<-` Man page
`lsDispModelH0_NB<-` Man page
`lsDispModelH1<-` Man page
`lsDispModelH1_NB<-` Man page
`lsDropModel<-` Man page
`lsFitConvergence<-` Man page
`lsMuModelConst<-` Man page
`lsMuModelH0<-` Man page
`lsMuModelH0_NB<-` Man page
`lsMuModelH1<-` Man page
`lsMuModelH1_NB<-` Man page
`matCountsProc<-` Man page
`matWeights<-` Man page
`scaDFSplinesDisp<-` Man page
`scaDFSplinesMu<-` Man page
`scaOmega<-` Man page
`strReport<-` Man page
`strVersion<-` Man page
`vecAllGenes<-` Man page
`vecConfoundersDisp<-` Man page
`vecConfoundersMu<-` Man page
`vecH0Pop<-` Man page
`vecNormConst<-` Man page
accessors Man page
boolFixedPopulation Man page
boolFixedPopulation<- Man page
boolFixedPopulations Man page Source code
calcNormConst Man page Source code
calcPostDrop_Matrix Man page Source code
calcPostDrop_Vector Man page Source code
decompressDispByGene Man page Source code
decompressDispByGeneMM Man page Source code
decompressDropoutRateByCell Man page Source code
decompressDropoutRateByGene Man page Source code
decompressMeansByGene Man page Source code
decompressMuByGeneMM Man page Source code
dfAnnotationProc Man page Man page Source code
dfAnnotationProc<- Man page
dfResults Man page Man page Source code
dfResults<- Man page
evalDropoutModel Man page Source code
evalDropoutModel_comp Man page
evalImpulseModel Man page Source code
evalImpulseModel_comp Man page
evalLogLikGene Man page Source code
evalLogLikGeneMM Man page Source code
evalLogLikMatrix Man page Source code
evalLogLikMuDispGeneFit Man page Source code
evalLogLikMuDispGeneFit_comp Man page
evalLogLikNB Man page Source code
evalLogLikNB_comp Man page
evalLogLikPiZINB_ManyCells Man page Source code
evalLogLikPiZINB_ManyCells_comp Man page
evalLogLikPiZINB_SingleCell Man page Source code
evalLogLikPiZINB_SingleCell_comp Man page
evalLogLikZINB Man page Source code
evalLogLikZINB_comp Man page
fitLPModels Man page Source code
fitModel Man page Source code
fitMuDisp Man page Source code
fitMuDispGene Man page Source code
fitMuDispGeneImpulse Man page Source code
fitMuDispGeneMM Man page Source code
fitPi Man page Source code
fitPi_ManyCells Man page Source code
fitPi_SingleCell Man page Source code
function Man page
getFitsDispersion Man page Source code
getFitsDropout Man page Source code
getFitsMean Man page Source code
getNormData Man page Source code
getPostDrop Man page Source code
initDispModel Man page Source code
initDropModel Man page Source code
initMuModel Man page Source code
initialiseImpulseParameters Man page Source code
lsDispModelConst Man page Man page Source code
lsDispModelConst<- Man page
lsDispModelH0 Man page Man page Source code
lsDispModelH0<- Man page
lsDispModelH0_NB Man page Source code
lsDispModelH0_NB<- Man page
lsDispModelH1 Man page Man page Source code
lsDispModelH1<- Man page
lsDispModelH1_NB Man page Source code
lsDispModelH1_NB<- Man page
lsDropModel Man page Man page Source code
lsDropModel<- Man page
lsFitConvergence Man page Man page Source code
lsFitConvergence<- Man page
lsMuModelConst Man page Man page Source code
lsMuModelConst<- Man page
lsMuModelH0 Man page Man page Source code
lsMuModelH0<- Man page
lsMuModelH0_NB Man page Man page Source code
lsMuModelH0_NB<- Man page
lsMuModelH1 Man page Man page Source code
lsMuModelH1<- Man page
lsMuModelH1_NB Man page Man page Source code
lsMuModelH1_NB<- Man page
main Man page
matCountsProc Man page Man page Source code
matCountsProc<- Man page
matWeights Man page Man page Source code
matWeights<- Man page
names,LineagePulseObject-method Man page
plotCellDensity Man page Source code
plotGene Man page Source code
processSCData Man page Source code
runDEAnalysis Man page Source code
runLineagePulse Man page Source code
scaDFSplinesDisp Man page Man page Source code
scaDFSplinesDisp<- Man page
scaDFSplinesMu Man page Man page Source code
scaDFSplinesMu<- Man page
scaOmega Man page Man page Source code
scaOmega<- Man page
simulateContinuousDataSet Man page Source code
sortGeneTrajectories Man page Source code
strReport Man page Man page Man page Source code Source code
strReport<- Man page
strVersion Man page Man page Source code
strVersion<- Man page
testDropout Man page Source code
vecAllGenes Man page Man page Source code
vecAllGenes<- Man page
vecConfoundersDisp Man page Man page Source code
vecConfoundersDisp<- Man page
vecConfoundersMu Man page Man page Source code
vecConfoundersMu<- Man page
vecH0Pop Man page Man page Source code
vecH0Pop<- Man page
vecNormConst Man page Man page Source code
vecNormConst<- Man page
wrapper, Man page
writeReport Man page Source code
YosefLab/LineagePulse documentation built on March 21, 2018, 8:54 p.m.