sub-sub-LineagePulseObject-character-missing-method: List-like accessor methods for LineagePulseObject: names()

In YosefLab/LineagePulse: Differential expression analysis and model fitting for single-cell RNA-seq data

Description

names() function for LineagePulseObject. Allow usage of LineagePulse ouput object like a list with respect to the most relevant output: dfLineagePulseResults and vecDEGenes. List of all available list-object like accessors: names,LineagePulseObject-method, [[,LineagePulseObject,character,missing-method, $,LineagePulseObject-method.

Usage

## S4 method for signature 'LineagePulseObject,character,missing'
x[[i, j, ...]]

Arguments

x	(LineagePulseObject) LineagePulse output object.
i	(str) Element from x list to be retrieved.
j	() Ignored argument to generic.
...	() Ignored argument to generic.

Value

Target element from x.

Author(s)

David Sebastian Fischer

Examples

   
lsSimulatedData <- simulateContinuousDataSet(
    scaNCells = 10,
    scaNConst = 2,
    scaNLin = 2,
    scaNImp = 2,
    scaMumax = 100,
    scaSDMuAmplitude = 3,
    vecNormConstExternal=NULL,
    vecDispExternal=rep(20, 6),
    vecGeneWiseDropoutRates = rep(0.1, 6))
objLP <- runLineagePulse(
    counts = lsSimulatedData$counts,
    dfAnnotation = lsSimulatedData$annot,
    strMuModel = "impulse")
head(objLP[["dfResults"]])

YosefLab/LineagePulse documentation built on May 6, 2019, 2:19 p.m.