DataPrep.RemapClustersMarkers: Remap Gene Symbols to Their Authorized Genenames

In ZJUDBlab/InterCellDB: Tool and Database for Analyzing Interactions

Remap Gene Symbols to Their Authorized Genenames

Description

Use species-specific reference database to remap genes to their authorized genenames.

Usage

DataPrep.RemapClustersMarkers(
  markers.all,
  species,
  if.used.inside = FALSE,
  final.dup.rm = TRUE
)

Arguments

markers.all	Data.frame. Feature genes that are generated from Seurat::FindAllMarkers() or similar functions in other packages.
species	InterCellDB supports species in either 'human' or 'mouse'. Other species are not supported to be used for analysis.
if.used.inside	Logic. If used inside, some process will not run.
final.dup.rm	Logic. If set TRUE, duplicated genes of each cluster in final mapping result will be removed. If set FALSE, those genes will be applied with function make.unique.

ZJUDBlab/InterCellDB documentation built on March 19, 2023, 4:56 p.m.