GetResultPieActionEffect: Get Result for Composition of Action Effect

In ZJUDBlab/InterCellDB: Tool and Database for Analyzing Interactions

Get Result for Composition of Action Effect

Description

This function focuses on one interaction pair and its detailed information(expression changes, gene-gene action effect), and get result from it.

Usage

GetResultPieActionEffect(
  object,
  limits.exprs.change = kexprs.change,
  limits.ext.action.effect = kpred.ext.action.effect,
  color.ext.action.effect = kpred.color.ext.effect,
  legend.title = "Action Effect",
  legend.title.size = element_text(size = 14),
  legend.key.size = unit(7, "mm"),
  legend.text.size = element_text(size = 12),
  legend.box.margin = margin(0, 0, 0, 6),
  show.note = TRUE,
  note.label.size = 3,
  note.lineheight = 1,
  note.postion.xy = c(0.5, 0.5),
  note.hjust = 0.5,
  note.vjust = 0.5
)

Arguments

object	A InterCell object, which is created by CreateInterCellObject.
limits.exprs.change	Options are 'Xup.Yup', 'Xup.Ydn', 'Xdn.Yup', 'Xdn.Ydn'. It selects the part of result to be shown.
limits.ext.action.effect	Options are listed in kpred.ext.action.effect. It specifies the range of shown extended action effect.
color.ext.action.effect	The colors to be used. It is one-to-one matching with limits.ext.action.effect.
legend.title	The content of legend title.
legend.title.size	The size of legend title.
legend.key.size	The size of keys in legend.
legend.text.size	The size of legend text.
legend.box.margin	The margin of legend box, and should be given in margin(). See ?margin for further help.
show.note	If set TRUE, the note will be shown in the graph.
note.label.size	Numeric. The size of note label.
note.lineheight	Numeric. The lineheight of note.
note.postion.xy	The position of note, should be 2 numbers that give the coordinate. Allowed range is (0~1, 0~1).
note.hjust	The horizontal alignment of note. Allowed range is 0~1.
note.vjust	The vertical alignment of note. Allowed range is 0~1.

Value

A list. Use Tool.ShowGraph() to see the plot, Tool.WriteTables() to save the result table in .csv files.

• plot: NULL.

• grid.plot: the graph.

• table: a list of data.frame.

ZJUDBlab/InterCellDB documentation built on March 19, 2023, 4:56 p.m.