GenerateMapDetailOnepairClusters: Collect Gene Pairs with Actions

In ZJUDBlab/InterCellDB: Tool and Database for Analyzing Interactions

Collect Gene Pairs with Actions

Description

This function uses actions.ref.db to collect gene pairs with their action properties. Not-recording ones will be set as 'undirected' (no direction and no detailed action).

Usage

GenerateMapDetailOnepairClusters(clusters.onepair.select, actions.ref.db)

Arguments

clusters.onepair.select	A list. Return value of ExtractTargetOnepairClusters.
actions.ref.db	Data.frame. Reference pairs actions database provided in this package, the list is given as follows: For human: actions.human.ref.db For mouse: actions.mouse.ref.db

Value

A list.

• clusters.name: names of clusters involved. Its length is 2.

• anno.infos: a list of lists. The sublists are

  • location.A: it records locations of A in gene pairs formatted as A-B

  • location.B: it records locations of B in gene pairs formatted as A-B

  • type.A: it records molecular functions of A in gene pairs formatted as A-B

  • type.B: it records molecular functions of B in gene pairs formatted as A-B

• actions.detailed: A list of detailed information about interaction pairs whose actions are recorded in actions.ref.db.

ZJUDBlab/InterCellDB documentation built on March 19, 2023, 4:56 p.m.