ExtractTargetOnepairClusters: Extract Pairs from One Interaction

In ZJUDBlab/InterCellDB: Tool and Database for Analyzing Interactions

Extract Pairs from One Interaction

Description

This function returns one pair of interaction by giving names of 2 cell clusters.

Usage

ExtractTargetOnepairClusters(
  interact.pairs.acted,
  cluster.name.C,
  cluster.name.D,
  kClustersSplit,
  just.list = FALSE
)

Arguments

interact.pairs.acted	The result of network analysis.
cluster.name.C	Name of one cluster.
cluster.name.D	Name of the other cluster.
kClustersSplit	Letters to split 2 interacting clusters.
just.list	If set TRUE, no automatic removing of NA will be performed for data.

Details

The direction of this function is C-D, corresponding to coordinates X-Y in plot, and the subset options applied before will be inherited, which means that options applied on X-axis clusters will be also on C, so as options on Y-axis will be on D.

Value

A list.

• clusters.name: names of clusters.

• bt.pairs: a list of all interaction pairs between specified 2 clusters (given in clusters.name).

• anno.infos: a list of lists. The sublists are

  • location.A: it records locations of A in gene pairs formatted as A-B

  • location.B: it records locations of B in gene pairs formatted as A-B

  • type.A: it records molecular functions of A in gene pairs formatted as A-B

  • type.B: it records molecular functions of B in gene pairs formatted as A-B

ZJUDBlab/InterCellDB documentation built on March 19, 2023, 4:56 p.m.