API for ZJUFanLab/SpaTalk
Infer Cell-Cell Communication for Spatial Transcriptomics
| Global functions | |
|---|---|
| .co_exp | Source code |
| .co_exp_batch | Source code |
| .co_exp_p | Source code |
| .coef_nor | Source code |
| .det_neighbor | Source code |
| .determine_celltype | Source code |
| .generate_ggi_res | Source code |
| .generate_newmeta | Source code |
| .generate_newmeta_cell | Source code |
| .generate_newmeta_doParallel | Source code |
| .generate_newmeta_spot | Source code |
| .generate_ref | Source code |
| .generate_tf_gene_all | Source code |
| .generate_tf_res | Source code |
| .get_cellpair | Source code |
| .get_score | Source code |
| .get_st_data | Source code |
| .get_st_meta | Source code |
| .get_tf_path | Source code |
| .get_tf_res | Source code |
| .get_tf_res_doParallel | Source code |
| .get_weight1 | Source code |
| .get_weight2 | Source code |
| .hvg | Source code |
| .lr_distance | Source code |
| .lr_distance_doParallel | Source code |
| .normalize_data | Source code |
| .percent_cell | Source code |
| .random_walk | Source code |
| .rename_chr | Source code |
| .run_cell2location | Source code |
| .run_deconvSeq | Source code |
| .run_rctd | Source code |
| .run_seurat | Source code |
| .run_spotlight | Source code |
| .run_stereoscope | Source code |
| .show_warning | Source code |
| .st_dist | Source code |
| SpaTalk | Man page |
| SpaTalk-class | Man page |
| createSpaTalk | Man page Source code |
| dec_cci | Man page Source code |
| dec_cci_all | Man page Source code |
| dec_celltype | Man page Source code |
| demo_dec_result | Man page Source code |
| demo_geneinfo | Man page Source code |
| demo_lrpairs | Man page Source code |
| demo_pathways | Man page Source code |
| demo_sc_data | Man page Source code |
| demo_st_data | Man page Source code |
| demo_st_meta | Man page Source code |
| demo_st_sc_data | Man page Source code |
| demo_st_sc_meta | Man page Source code |
| find_lr_path | Man page Source code |
| geneinfo | Man page |
| generate_spot | Man page Source code |
| get_lr_path | Man page Source code |
| lrpairs | Man page |
| pathways | Man page |
| plot_ccdist | Man page Source code |
| plot_cci_lrpairs | Man page Source code |
| plot_lr_path | Man page Source code |
| plot_lrpair | Man page Source code |
| plot_lrpair_vln | Man page Source code |
| plot_path2gene | Man page Source code |
| plot_st_celltype | Man page Source code |
| plot_st_celltype_all | Man page Source code |
| plot_st_celltype_density | Man page Source code |
| plot_st_celltype_percent | Man page Source code |
| plot_st_cor_heatmap | Man page Source code |
| plot_st_gene | Man page Source code |
| plot_st_pie | Man page Source code |
| plot_st_pie_generate | Man page Source code |
| rev_gene | Man page Source code |
| set_expected_cell | Man page Source code |
| show,SpaTalk-method | Man page |
