generate_spot: Generate pseudo spot st_data

In ZJUFanLab/SpaTalk: Infer Cell-Cell Communication for Spatial Transcriptomics

Generate pseudo spot st_data

Description

Generate pseudo spot st_data with single-cell st_data

Usage

generate_spot(st_data, st_meta, x_min, x_res, x_max, y_min, y_res, y_max)

Arguments

st_data	A data.frame or matrix or dgCMatrix containing counts of spatial transcriptomics, each column representing a cell, each row representing a gene.
st_meta	A data.frame containing coordinate of spatial transcriptomics with three columns, 'cell', 'x', 'y', and celltype.
x_min	Min value of x axis.
x_res	Resolution of x coordinate.
x_max	Max value of x axis.
y_min	Min value of y axis.
y_res	Resolution of y coordinate.
y_max	Max value of y axis.

Value

A list of spot st_data and st_meta

ZJUFanLab/SpaTalk documentation built on Jan. 21, 2025, 3:13 p.m.