plot_lrpair_vln: Plot spatial distance of LR pair with vlnplot

In ZJUFanLab/SpaTalk: Infer Cell-Cell Communication for Spatial Transcriptomics

Plot spatial distance of LR pair with vlnplot

Description

Violin plot spatial distance of LR pair between expressed senders and receivers and between expressed cell-cell pairs.

Usage

plot_lrpair_vln(
  object,
  celltype_sender,
  celltype_receiver,
  ligand,
  receptor,
  vln_color = NULL,
  if_plot_boxplot = T,
  box_width = 0.2
)

Arguments

object	SpaTalk object generated from dec_celltype.
celltype_sender	Name of celltype_sender.
celltype_receiver	Name of celltype_receiver.
ligand	Name of ligand from celltype_sender.
receptor	Name of receptor from celltype_receiver.
vln_color	Color for violins. Two values.
if_plot_boxplot	Whether to plot boxplot. Default is TRUE.
box_width	Box width. Default is 0.2.

ZJUFanLab/SpaTalk documentation built on Jan. 21, 2025, 3:13 p.m.