plot_st_celltype_density: Plot spatial density of a single cell type

In ZJUFanLab/SpaTalk: Infer Cell-Cell Communication for Spatial Transcriptomics

Plot spatial density of a single cell type

Description

Plot spatial density of a single predicted cell type for transcriptomics data

Usage

plot_st_celltype_density(
  object,
  celltype,
  type,
  if_plot_point = T,
  point_color = NULL,
  point_size = 1,
  color_low = "grey",
  color_mid = NULL,
  color_high = "blue",
  color_midpoint = NULL,
  size = 1
)

Arguments

object	SpaTalk object generated from dec_celltype.
celltype	Name of cell type in the sc_celltype.
type	Select 'contour' or 'raster'.
if_plot_point	Whether to plot points when type is 'contour'.
point_color	Point color.
point_size	Point size. Default is 1.
color_low	Color for the lowest value.
color_mid	Color for the middle value for using scale_color_gradient2. Default is NULL.
color_high	Color for the highest value.
color_midpoint	Value for the middle scale. Default is NULL.
size	Line size when type is 'contour'. Default is 1.

ZJUFanLab/SpaTalk documentation built on Jan. 21, 2025, 3:13 p.m.