plot_cci_lrpairs: Plot LR pairs
In ZJUFanLab/SpaTalk: Infer Cell-Cell Communication for Spatial Transcriptomics

plot_cci_lrpairs

R Documentation

Plot LR pairs

Description

Heatmap with LR pairs of celltype_sender and celltype_receiver

Usage

plot_cci_lrpairs(
  object,
  celltype_sender,
  celltype_receiver,
  top_lrpairs = 20,
  color = NULL,
  border_color = "black",
  type = "sig",
  fontsize_number = 5,
  number_color = "black",
  color_low = NULL,
  color_high = NULL
)

Arguments

`object`	SpaTalk object generated from `dec_cci`.
`celltype_sender`	Name of celltype_sender.
`celltype_receiver`	Name of celltype_receiver.
`top_lrpairs`	Number of top lrpairs for plotting. Default is `20`.
`color`	Color for the cells in heatmap.
`border_color`	color of cell borders on heatmap, use NA if no border should be drawn.
`type`	Set 'sig' to plot significant LRI pairs or set 'number' to plot the number of spatial LRI pairs.
`fontsize_number`	fontsize of the numbers displayed in cells.
`number_color`	color of the text.
`color_low`	For 'number' type, define the color for the lowest value.
`color_high`	For 'number' type, define the color for the highest value.