Man pages for ZJUFanLab/SpaTalk
Infer Cell-Cell Communication for Spatial Transcriptomics
| createSpaTalk | SpaTalk object |
| dec_cci | Decomposing cell-cell communications for spatial... |
| dec_cci_all | Decomposing cell-cell communications for spatial... |
| dec_celltype | Decomposing cell type for spatial transcriptomics data |
| demo_dec_result | Demo data of dec_result |
| demo_geneinfo | Demo data of geneinfo |
| demo_lrpairs | Demo data of lrpairs |
| demo_pathways | Demo data of pathways |
| demo_sc_data | Demo data of sc_data |
| demo_st_data | Demo data of st_data |
| demo_st_meta | Demo data of st_meta |
| demo_st_sc_data | Demo data of single-cell st_data |
| demo_st_sc_meta | Demo data of st_sc_meta |
| find_lr_path | Find lrpairs and pathways |
| geneinfo | geneinfo |
| generate_spot | Generate pseudo spot st_data |
| get_lr_path | Get LR and downstream pathways |
| lrpairs | lrpairs |
| pathways | pathways |
| plot_ccdist | Plot cell-cell distribution |
| plot_cci_lrpairs | Plot LR pairs |
| plot_lrpair | Plot LR pair |
| plot_lrpair_vln | Plot spatial distance of LR pair with vlnplot |
| plot_lr_path | Plot LR and downstream pathways |
| plot_path2gene | River plot of significantly activated pathways and related... |
| plot_st_celltype | Plot spatial distribution of a single cell type |
| plot_st_celltype_all | Plot spatial distribution of all cell types |
| plot_st_celltype_density | Plot spatial density of a single cell type |
| plot_st_celltype_percent | Plot spatial distribution of a single cell type percent |
| plot_st_cor_heatmap | Plot heatpmap of correlation between marker genes and cell... |
| plot_st_gene | Plot spatial distribution of gene |
| plot_st_pie | Plot spatial transcriptomics data |
| plot_st_pie_generate | Plot spatial transcriptomics data |
| rev_gene | Pre-processing step: revising gene symbols |
| set_expected_cell | Set the expected cell |
| show-SpaTalk-method | Show SpaTalk object |
| SpaTalk | Definition of 'SpaTalk' class |
