Man pages for abelew/Rerrrt
Examine RT error rates through sequencing.

barplot_matricesMake a bar plot for every type of data returned by...
classify_sequencesGiven a set of sequences containing mutations and identical...
count_mutation_directionCount up how many reads are on the forward and reverse...
count_mutation_typesCount up all sorts of fun mutation types in the data!
create_matricesGiven a samples sheet with some metadata, create a big pile...
errRterrRt: Some functions for analyzing sequencing data intended...
expand_mutation_stringCombine the columns describing a mutation into a single...
filter_max_mutationsFilter away reads which have > n mutations in them.
filter_max_positionFilter away reads after position x.
filter_min_positionFilter away reads before position x.
filter_nsFilter away reads which contain Ns.
filter_pruned_indexesFilter away reads which are associated with indexes that have...
matrices_from_tablesGiven the many tables provided by quantify, merge them into...
normalize_matricesInvoke some normalization methods on the various matrices...
pipePipe operator
plot_index_densityMake a density plot of how many indexes are associated with...
prune_indexesSummarize the mutant/identical data with respect to the...
quantify_parsedQuantify the tables of reads identical/different to/from the...
sequencer_errorCalculate a lower limit error rate for the sequencer.
write_matricesMake a pretty xlsx file of the various summary statistics and...
abelew/Rerrrt documentation built on Jan. 13, 2020, 3:20 p.m.