Description Usage Arguments Value
View source: R/expand_mutations.r
Given a table with columns including the position, mutation type, reference nt at that position, and product nt at that position; create a single column from it, standardize it, and make some categories describing each mutation. These columns currently include: 'mt': X_Y telling that this is a mutation from X to Y, 'transition_transversion': this is a transition or transversion mismatch, 'strong_weak': this mismatch went from strong->weak, weak->strong, weak->weak, or strong->strong. undef is used in the case of indels.
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t |
Table from readr. |
The same table with some new columns describing the mutations therein.
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