count_mutation_types: Count up all sorts of fun mutation types in the data!

In abelew/Rerrrt: Examine RT error rates through sequencing.

Description

This is my favorite function in this! It counts up all sorts of fun mutation types in the data and gives back tables of the results.

Usage

count_mutation_types(
  strict_rt,
  strict_sequencer,
  min_indexes = 3,
  verbose = FALSE
)

Arguments

strict_rt	Indexes from RT errors.
strict_sequencer	Indexes from sequencer errors.
min_indexes	The minimum number of indexes required to deem a given error as 'real'.
verbose	Print some information about the run.

Value

Tables of the various mutation types.

abelew/Rerrrt documentation built on Jan. 15, 2022, 8 a.m.