prune_indexes: Summarize the mutant/identical data with respect to the...

In abelew/Rerrrt: Examine RT error rates through sequencing.

Description

This should provide a table of how many reads/index are (a)identical, (b)contain mutations, and the sum of (a + b). If a minimum number of reads is requested (e.g. min_reads is a number), return the list of indexes which have at least that many reads. This set of indexes may be used in other contexts to limit the data.

Usage

prune_indexes(chng, ident, min_reads = 3, verbose = TRUE)

Arguments

chng	The result of read_tsv() on a file containing a mutation table.
ident	The result of read_tsv() on a file containing identical reads.
min_reads	Minimum read / index filter.
verbose	Print information about this while it runs?

Value

List with the summary of the numbers of reads observed and the indexes kept. The list of indexes kept may just be 'all'.

abelew/Rerrrt documentation built on Jan. 15, 2022, 8 a.m.