Files in aertslab/RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
DESCRIPTION
NAMESPACE
R/00_importAnnotations.R
R/00_importRankings.R
R/01_calcAUC.R
R/02_addMotifAnnotation.R
R/03_addSignificantGenes.R
R/10_cisTarget.R
R/aux_addLogo.R
R/aux_convertToTargetRegions.R
R/aux_getDbRegionsLoc.R
R/aux_reRank.R
R/class_aucScores.R
R/class_rankingRcisTarget.R
R/data_dbRegionsLoc.R
R/data_motifAnnotations.R
R/priv_calcErn.R
R/priv_plotRCC.R
README.md
data/dbRegionsLoc_hg19_v9.RData
data/motifAnnotations_dmel.RData
data/motifAnnotations_dmel_v8.RData
data/motifAnnotations_dmel_v9.RData
data/motifAnnotations_hgnc.RData
data/motifAnnotations_hgnc_v9.RData
data/motifAnnotations_mgi.RData
data/motifAnnotations_mgi_v9.RData
inst/CITATION
inst/NEWS
inst/examples/Encode_GATA1_peaks.bed
inst/examples/example_addLogo.R
inst/examples/example_addMotifAnnotation.R
inst/examples/example_addSignificantGenes.R
inst/examples/example_aucScores_class.R
inst/examples/example_cisTarget.R
inst/examples/example_reRank.R
inst/examples/example_showLogo.R
inst/examples/example_workflow.R
inst/examples/hypoxiaGeneSet.txt
inst/examples/motifEnrichmentTable_wGenes.RData
inst/examples/randomGeneSet.txt
man/RcisTarget.Rd
man/addLogo.Rd
man/addMotifAnnotation.Rd
man/addSignificantGenes.Rd
man/aucScores-class.Rd
man/calcAUC.Rd
man/convertToTargetRegions.Rd
man/dbRegionsLoc.Rd
man/getDbRegionsLoc.Rd
man/getMotifAnnotation.Rd
man/importAnnotations.Rd
man/importRankings.Rd
man/motifAnnotations.Rd
man/rankingRcisTarget-class.Rd
man/reRank.Rd
man/showLogo.Rd
tests/testthat.R
tests/testthat/test_RcisTarget.R
vignettes/RcisTarget_MainTutorial.Rmd
vignettes/Tutorial_AnalysisOfGenomicRegions.Rmd
vignettes/Tutorial_AnalysisOfGenomicRegions.nb.html
vignettes/Tutorial_AnalysisWithBackground.Rmd
vignettes/corrected.css
