aertslab/ScoMAP: ScoMAP: Single-Cell Omics Mapping into spatial Axes using Pseudotemporal ordering

ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells. These virtual cells may be organized on a template that resembles the tissue, or into an abstract space (e.g. when cell types are not spatially located). ScoMAP also includes functionalities to derive enhancer-to-gene relationships from the virtual template when mapping both single-cell transcriptomic and epigenomic data into the virtual cells.

Getting started

Package details

AuthorCarmen Bravo González-Blas
Bioconductor views AnnotationDbi GenomicRanges
MaintainerCarmen Bravo González-Blas <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
aertslab/ScoMAP documentation built on Oct. 8, 2021, 1:15 a.m.