Description Usage Arguments Examples
Plot omics data into the virtual template.
1 | PlotVMFeatures(VM, omics_mat, features, thr = 0)
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VM |
Virtual map data frame, after running mapCells() |
omics_mat |
Matrix containing features as rows (e.g. genes, regions) and real cells as columns. |
features |
Vector with the names of features to be plotted on the virtual template. Features will be assigned to the corresponding RGB channel depending on the order. |
thr |
Threshold (between 0 and 1) to color cells with low feature value in grey. Default: 0. |
1 | PlotVMFeatures(VM, dgem, features=c('ato', 'hth', 'Optix'))
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