readTemplateBySection: readTemplateBySection
In aertslab/ScoMAP: ScoMAP: Single-Cell Omics Mapping into spatial Axes using Pseudotemporal ordering
Description
Usage
Arguments
Value
Examples
Description
Read separate sections from virtual template (in jpeg) into R. One image has to be provided per spatial cluster.
Usage
1
readTemplateBySection(pathToJpegFolder, plot = TRUE)
Arguments
pathToJpegFolder
Path to the folder containin jpeg images. The number of virtual cells will be determined by the
size of the picture.
plot
Boolean indicating whether to return the computed template colored by spatial sections.
Default: TRUE.
Value
A virtual map data.frame containing the virtual cell coordinates, assigned spatial cluster (based on the file name),
and cluster color
Examples
1
virtualTemplate <- readTemplateBySection(pathToJpeg)
aertslab/ScoMAP documentation built on Oct. 8, 2021, 1:15 a.m.
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Description Usage Arguments Value Examples
Description
Read separate sections from virtual template (in jpeg) into R. One image has to be provided per spatial cluster.
Usage
1 | readTemplateBySection(pathToJpegFolder, plot = TRUE)
|
Arguments
pathToJpegFolder |
Path to the folder containin jpeg images. The number of virtual cells will be determined by the size of the picture. |
plot |
Boolean indicating whether to return the computed template colored by spatial sections. Default: TRUE. |
Value
A virtual map data.frame containing the virtual cell coordinates, assigned spatial cluster (based on the file name), and cluster color
Examples
1 | virtualTemplate <- readTemplateBySection(pathToJpeg)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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