VM_loom: VM_loom

Description Usage Arguments Examples

View source: R/visualizeMappedData.R

Description

Generates a minimal loom file to visualize data on SCope (http://scope.aertslab.org).

Usage

1
VM_loom(VM, omics_mat, loom_path, genome)

Arguments

VM

Virtual map data frame, after running mapCells()

omics_mat

Matrix containing features as rows (e.g. genes, regions) and real cells as columns.

loom_path

Path where the loom file will be generated

genome

Genome version to which data belongs

Examples

1
VM_loom(VM, dgem, loom_path='VM.loom', genome='dm6')

aertslab/ScoMAP documentation built on Oct. 8, 2021, 1:15 a.m.