Description Usage Arguments Value Examples
Read template from a loom file with coordinates as embeddings and cluster annotation as metadata.
1 | readTemplateFromLoom(loom_path, cluster_variable, embedding_name)
|
loom_path |
Path to loom file |
cluster_variable |
Name of the variable to use as cluster annotation |
embedding_name |
Name of the embedding to use for spatial coordinates |
A virtual map data.frame containing the virtual cell coordinates and assigned spatial cluster
1 | virtualTemplate <- readTemplateFromLoom (loom_path, cluster_variable, embedding_name)
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