Files in ahmohamed/lipidr

Data Mining and Analysis of Lipidomics Datasets

.Rbuildignore

.github/.gitignore

.github/workflows/check-bioc.yml

.gitignore

DESCRIPTION

Dockerfile

LICENSE

LICENSE.md

NAMESPACE

NEWS

R/annotation.R R/bioc.R R/check_files.R R/de-analysis.R R/impute.R R/lipidr-package.R R/lsea.R R/manip.R R/mva.R R/mw.R R/normalize.R R/plot.R R/readfiles.R R/summarize.R R/utils-df.R R/utils-misc.R R/utils-pipe.R R/utils-workflow.R README.md

codecov.yml

data-raw/data_normalized.R data-raw/lipidnames_pattern.R

data/data_normalized.rda

data/lipidDefaults.rda

data/lipidnames_pattern.rda

docs/CNAME

inst/WORDLIST

inst/extdata/A1_data.csv

inst/extdata/F1_data.csv

inst/extdata/F2_data.csv

inst/extdata/brca_clin.csv

inst/extdata/brca_matrix.csv

inst/extdata/clin.csv

man/LipidomicsExperiment-class.Rd man/LipidomicsExperiment.Rd man/add_sample_annotation.Rd man/annotate_lipids.Rd man/as_lipidomics_experiment.Rd man/data_normalized.Rd man/de_analysis.Rd

man/figures/logo.png

man/figures/num_matrix.png

man/figures/skyline_export.png

man/figures/workflow.png

man/filter_by_cv.Rd man/gen_lipidsets.Rd man/impute_na.Rd man/lipidDefaults.Rd man/lipidnames_pattern.Rd man/lipidr-data.Rd man/lipidr-package.Rd man/lsea.Rd man/mva.Rd man/mw.Rd man/non_parsed_molecules.Rd man/normalize_istd.Rd man/normalize_pqn.Rd man/pipe.Rd man/plot_chain_distribution.Rd man/plot_lipidclass.Rd man/plot_molecules.Rd man/plot_samples.Rd man/plot_trend.Rd man/read_skyline.Rd man/remove_non_parsed_molecules.Rd man/set_attr.Rd man/summarize_transitions.Rd man/update_molecule_names.Rd man/use_interactive_graphics.Rd

pkgdown/_pkgdown.yml

pkgdown/extra.css

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

tests/spelling.R tests/testthat.R

tests/testthat/A1.csv

tests/testthat/A1_pivot.csv

tests/testthat/F2.csv

tests/testthat/helper-lipidex.R tests/testthat/test-annotation.R tests/testthat/test-deanalysis.R tests/testthat/test-fromdf.R tests/testthat/test-impute.R tests/testthat/test-interactive-plots.R tests/testthat/test-lsea.R tests/testthat/test-manip.R tests/testthat/test-mw.R tests/testthat/test-normalize.R tests/testthat/test-readfiles-num_matrix.R tests/testthat/test-readfiles-sample_annot.R tests/testthat/test-readfiles.R tests/testthat/test-summarize.R tests/testthat/test-workflow.R vignettes/examples/mw_integration.Rmd vignettes/workflow.Rmd

ahmohamed/lipidr documentation built on July 7, 2023, 2:22 a.m.