LipidomicsExperiment: Constructor for Lipidomics experiment from list of assays
In ahmohamed/lipidr: Data Mining and Analysis of Lipidomics Datasets
LipidomicsExperiment R Documentation
Constructor for Lipidomics experiment from list of assays
Description
Constructor for Lipidomics experiment from list of assays
Usage
LipidomicsExperiment(assay_list, metadata, colData = NULL, rowData = NULL)
Arguments
assay_list
A list or SimpleList of matrix-like elements,
or a matrix-like object. Passed to SummarizedExperiment().
metadata
A list containing arbitrary information about the experiment.
It should at least contain 2 elements:
dimnames 2-element character vector with dimension names
summarized Has transitions been summarized?
colData
An optional DataFrame describing the samples (contains
clinical information). Row names, if present, become the column names of
the LipidomicsExperiment.
rowData
A DataFrame object describing the rows (contains generated
lipid annotations). Row names, if present, become the row names of the
SummarizedExperiment object. The number of rows of the DataFrame
must be equal to the number of rows of the matrices in assays.
Value
LipidomicsExperiment object
ahmohamed/lipidr documentation built on July 7, 2023, 2:22 a.m.
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| LipidomicsExperiment | R Documentation |
Constructor for Lipidomics experiment from list of assays
Description
Constructor for Lipidomics experiment from list of assays
Usage
LipidomicsExperiment(assay_list, metadata, colData = NULL, rowData = NULL)
Arguments
assay_list |
A list or SimpleList of matrix-like elements,
or a matrix-like object. Passed to |
metadata |
A list containing arbitrary information about the experiment. It should at least contain 2 elements:
|
colData |
An optional DataFrame describing the samples (contains clinical information). Row names, if present, become the column names of the LipidomicsExperiment. |
rowData |
A DataFrame object describing the rows (contains generated lipid annotations). Row names, if present, become the row names of the SummarizedExperiment object. The number of rows of the DataFrame must be equal to the number of rows of the matrices in assays. |
Value
LipidomicsExperiment object
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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