Man pages for ahmohamed/lipidr
Lipidomics Analysis Workflow in R

add_sample_annotationAdd sample annotation to Skyline data frame
annotate_lipidsParse molecule names to extract lipid class and chain...
data_normalizedExample dataset (normalized and log2 transformed)
de_analysisDifferential analysis of lipids between sample groups
dot-as_regexRegex-escaping for character vectors.
dot-read_skyline_fileInternal method to read skyline file
gen_lipidsetsGenerate lipid sets from lipid molecule names
lipidDefaultsDefault values for lipidr internal functions A set of default...
lipidnames_patternPatterns used in parsing lipid names
lipidr-dataDescription of lipidr datasets
lipidr-packageAnalysis workflow for targeted lipidomics
lseaLipid set enrichment analysis (LSEA)
mvaPerform multivariate analyses to investigate sample...
normalize_istdNormalize each class by its corresponding internal...
normalize_pqnPerform Probabilistic Quotient Normalization for intensities.
pipePipe operator
plot_chain_distributionPlot logFC of lipids per class showing chain information Plot...
plot_lipidclassInformative plots to investigate lipid classes
plot_moleculesInformative plots to investigate individual lipid molecules
plot_samplesInformative plots to investigate samples
read_skylineRead Skyline exported files
SkylineExperimentConstructor for Skyline experiment from list of assays
SkylineExperiment-classSkylineExperiment object
summarize_transitionsSummarize transitions
use_interactive_graphicsActivate interactive graphics
ahmohamed/lipidr documentation built on April 23, 2019, 7:59 p.m.