aiminy/GOSJ
A R package for GO term enrichment analysis with the flexible bias factor adjustment

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Combine3Re: Combine3Re

Combine3Re: Combine3Re
In aiminy/GOSJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment

Description Usage Arguments Examples

Description

This function combines feature based differential usage results, the derived gene based results from feature based results and the resutls from rMAT to identify the common results between 3 methods

Usage

1
Combine3Re(Re.PJ, re.PJ.gene.based, re.rMAT, gene.model, Output_files_dir)

Arguments

Re.PJ:

Output from JunctionSeq

re.PJ.gene.based:

Gene based results from JunctionSeq

re.rMAT:

Results from rMAT

Output_GO_BP_feature_gene_redefined

Examples

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2
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Re.combine.3.methods<-Combine3Re(Re.PJ, re.PJ.gene.based, re.rMAT,gene.model,output.dir.name.new)

Re.combine.3.methods.rMAT.SE<-Combine3Re(Re.PJ, re.PJ.gene.based, re.rMAT,gene.model,output.dir.name.rMAT_SE_based)

aiminy/GOSJ documentation built on May 12, 2019, 3:38 a.m.

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