OutputCatBasedPwf: OutputCatBasedPwf

In aiminy/GOSJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment

Description

Reformat genewised results from JunctionSeq, and use this one to get enriched GO terms

Usage

OutputCatBasedPwf(Re.pwf.exon.sj, gene_model, gene_2_cat, Output_file)

Arguments

Output_file

Examples

RE.cp<-OutputCatBasedPwf(Re.pwf.exon.sj,gene_model=gene.model,gene_2_cat=gene.2.cat.cp.mouse,Output_file="Cp.xls")

RE.cft<-OutputCatBasedPwf(Re.pwf.exon.sj,gene_model=gene.model,gene_2_cat=gene.2.cat.tft.mouse,Output_file="C_tft.xls")


RE.cp.gene<-OutputCatBasedPwf(Gene.non.coding.GO$pwf,gene_model=gene.model,gene_2_cat=gene.2.cat.cp.mouse,
Output_file="/media/H_driver/PJ/geneGL_rm_non_coding_Cp.xls")

RE.cft.gene<-OutputCatBasedPwf(Gene.non.coding.GO$pwf,gene_model=gene.model,gene_2_cat=gene.2.cat.tft.mouse,
Output_file="/media/H_driver/PJ/geneGL_rm_non_coding_tft.xls")

aiminy/GOSJ documentation built on May 12, 2019, 3:38 a.m.