Description Usage Arguments Examples
Read a gmt file, and return a list with the name of element being a gene id based on gene_anno_file, and each element being the pathways that this gene corresponds to
1 | Gmt2GeneCat(gmt_input_file, gene_anno_file)
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based_by |
1 2 3 4 5 | gene.2.cat.cp.mouse<-Gmt2GeneCat("/media/H_driver/Annotation/MsigDB/c2.cp.Mouse.v5.1.symbols.gmt",
"/media/H_driver/Annotation/mm10/genes_table_02052016.csv")
gene.2.cat.tft.mouse<-Gmt2GeneCat("/media/H_driver/Annotation/MsigDB/c3.tft.Mouse.v5.1.symbols.gmt",
"/media/H_driver/Annotation/mm10/genes_table_02052016.csv")
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