plotPWF2: Plot the probability Weighting Function

In aiminy/GOSJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment

Description

Plot the probability Weighting Function

Usage

plotPWF2(pwf, binsize = "auto", pwf_col = 3, pwf_lwd = 2,
  xlab = "Biased Data in <binsize> gene bins.", ylab = "Proportion DE", ...)

plotPWF2(pwf, binsize = "auto", pwf_col = 3, pwf_lwd = 2,
xlab = "Biased Data in <binsize> gene bins.", ylab = "Proportion DE", ...)

Arguments

pwf	probability weigth function
binsize	the number of gene in each bin(gene set)
pwf_col	the color for the fitted line of probability weigth function
pwf_lwd	the font for the fitted line of probability weigth function
xlab	the label for x-axis
ylab	the label for y-axis
...
...

Examples

png("~/GOSJ/Figure/pwfGeneGL.tiff")
plotPWF2(Gene.based.DE.feature.based.DE$pwfGeneGL)
dev.off()

png("~/GOSJ/Figure/pwfGeneFeature.tiff")
plotPWF2(Gene.based.DE.feature.based.DE$pwfGeneFeature)
dev.off()

png("~/GOSJ/Figure/pwfFeatureGL.tiff")
plotPWF2(Gene.based.DE.feature.based.DE$pwfFeatureGL)
dev.off()

png("~/GOSJ/Figure/pwFeatureFeature.tiff")
plotPWF2(Gene.based.DE.feature.based.DE$pwfFeatureFeature)
dev.off()

aiminy/GOSJ documentation built on May 12, 2019, 3:38 a.m.