API for aiminy/GOSJ
A R package for GO term enrichment analysis with the flexible bias factor adjustment

Global functions
Combine3Re Man page Source code
CombineCpTftGoGeneID Man page Source code
CompareDEfromGeneWithDEfromFeatures Man page Source code
CompareGOResults Man page Source code
DE_based_on_gene_count Source code
Draw4Cat Man page Source code
Draw4GO Man page Source code
DrawFeature Man page Source code
ExtractGeneIDFromGo Man page Source code
FDR_genewise Man page Source code
GSA.read.gmt.2 Man page Source code
GeneBasedAnalysis Man page Source code
GeneWisePvsExonWiseP Man page Source code
GenerateGeneAnno Man page Source code
GetCCBetweenMostSigPadjustSJ Man page Source code
GetDesign Man page Source code
GetMgiSymbolDescription Man page Source code
GetMgiSymbolUsingLocalDataBase Man page Source code
GetPwfUseReformatedData Man page Source code
GetResults4GeneLevel Man page Source code
GetResultsFromJunctionSeq Man page Source code
Get_Over_under_represented_pvalue Man page Source code
Gmt2GeneCat Man page Source code
GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGen Man page Source code
GotermAnalysisUseFeatureDefineDE Man page Source code
GotermAnalysisUseReformatedData Man page Source code
JS.perGeneQValue Man page Source code
JS.perGeneQValueExact Man page Source code
JS.perGeneQValueExact.test Man page Source code
LabelGeneBasedFeature Man page Source code
NBsim Man page Source code
OuputGO Man page
OutputCatBasedPwf Man page Source code
OutputFigure Man page Source code
OutputGOBasedDEfromFeatures Man page Source code
OutputGOBasedDEfromFeatures2 Man page Source code
OutputGOBasedDEfromFeatures3 Man page Source code
OutputGeneWiseTable Man page Source code
PermutattionOfRawData Man page Source code
ProcessCuffLinkResults Man page Source code
ProcessOutputFilesFrom_rMATS Man page Source code
ReformatData Man page Source code
ReformatDataUseTable Man page Source code
SelectFeature Man page Source code
Select_DE_gene_basd_on_Feature Man page Source code
SimulationSJ2DE Man page Source code
UseLogistic2CKBias Man page Source code
UseLogistic2_adDE Man page Source code
UseOtherDataSet Man page Source code
callQoRT Man page Source code Source code
callQoRT2 Source code
gene2cat Man page Source code
gene2cat2 Man page Source code
getDataset Man page Source code
getgo Man page Source code
getgo3 Man page Source code
goseq2 Man page Source code
list_to_df Man page Source code
makeGeneWiseTable Man page Source code
onAttach Source code
plotPWF2 Man page Source code Source code
readJunctionSeqCounts Man page Source code
reversemapping Man page Source code
aiminy/GOSJ documentation built on Nov. 29, 2017, 4:12 a.m.