GetResults4GeneLevel: GetResults4GeneLevel

In aiminy/GOSJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment

Description

This function applies DESeq2 to gene level count to identify differentially expressed genes

Usage

GetResults4GeneLevel(dir.name, file.sample, file.count)

Arguments

dir.name:	path that count file and sample information file is in
file.sample:	sample information file
file.count:	count files

Value

results from DESeq2

Examples

# For PJ project
dir.name.PJ.gene="/media/H_driver/PJ/"
file.sample.PJ.gene="decoder.bySample.rtf"
file.count.PJ.gene="/QC.geneCounts.formatted.for.DESeq.txt"

Re.PJ.gene<-GetResults4GeneLevel(dir.name.PJ.gene,file.sample.PJ.gene,file.count.PJ.gene)

aiminy/GOSJ documentation built on May 12, 2019, 3:38 a.m.