Files in aiminy/GOSJ
A R package for GO term enrichment analysis with the flexible bias factor adjustment

DESCRIPTION
Figure/20160213_094438.png
Figure/BiasFromGeneStructure.png
Figure/gene_feature_DE.tiff
Figure/pwFeatureFeature.pdf
Figure/pwFeatureFeature.tiff
Figure/pwfFeatureGL.pdf
Figure/pwfFeatureGL.tiff
Figure/pwfGeneFeature.pdf
Figure/pwfGeneFeature.tiff
Figure/pwfGeneGL.pdf
Figure/pwfGeneGL.tiff
Figure/sjvsGL.png
Figure/sjvsexons.png
Figure/working_flow.png
GOSJ.Rmd
GOSJ.Rproj
GOSJ.pdf GOSJ_PJ.Rmd GOSJ_ver_1.0.Rmd
NAMESPACE
R/GOSJ.R R/callQoRT.R README.md
Splicing-network.bib
inst/6_Samples_Count_data.csv
inst/bin/bash/ProcessEnsemble2.sh
inst/example.sj.6.samples.csv
inst/gene.model.RData
inst/gene.model.hg38.RData
inst/gene_annotation.txt
inst/genes.RData
inst/genes_table_02052016.csv
inst/genes_table_02052016.txt
man/Combine3Re.Rd man/CombineCpTftGoGeneID.Rd man/CompareDEfromGeneWithDEfromFeatures.Rd man/CompareGOResults.Rd man/Draw4Cat.Rd man/Draw4GO.Rd man/DrawFeature.Rd man/ExtractGeneIDFromGo.Rd man/FDR_genewise.Rd man/GSA.read.gmt.2.Rd man/GeneBasedAnalysis.Rd man/GeneWisePvsExonWiseP.Rd man/GenerateGeneAnno.Rd man/GetCCBetweenMostSigPadjustSJ.Rd man/GetDesign.Rd man/GetMgiSymbolDescription.Rd man/GetMgiSymbolUsingLocalDataBase.Rd man/GetPwfUseReformatedData.Rd man/GetResults4GeneLevel.Rd man/GetResultsFromJunctionSeq.Rd man/Get_Over_under_represented_pvalue.Rd man/Gmt2GeneCat.Rd man/GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGene.Rd man/GotermAnalysisUseFeatureDefineDE.Rd man/GotermAnalysisUseReformatedData.Rd man/JS.perGeneQValue.Rd man/JS.perGeneQValueExact.Rd man/JS.perGeneQValueExact.test.Rd man/LabelGeneBasedFeature.Rd man/NBsim.Rd man/OuputGO.Rd man/OutputCatBasedPwf.Rd man/OutputFigure.Rd man/OutputGOBasedDEfromFeatures.Rd man/OutputGOBasedDEfromFeatures2.Rd man/OutputGOBasedDEfromFeatures3.Rd man/OutputGeneWiseTable.Rd man/PermutattionOfRawData.Rd man/ProcessCuffLinkResults.Rd man/ProcessOutputFilesFrom_rMATS.Rd man/ReformatData.Rd man/ReformatDataUseTable.Rd man/SelectFeature.Rd man/Select_DE_gene_basd_on_Feature.Rd man/SimulationSJ2DE.Rd man/UseLogistic2CKBias.Rd man/UseLogistic2_adDE.Rd man/UseOtherDataSet.Rd man/callQoRT.Rd man/gene2cat.Rd man/gene2cat2.Rd man/getDataset.Rd man/getgo.Rd man/getgo3.Rd man/goseq2.Rd man/list_to_df.Rd man/makeGeneWiseTable.Rd man/plotPWF2.Rd man/readJunctionSeqCounts.Rd man/reversemapping.Rd
aiminy/GOSJ documentation built on Nov. 29, 2017, 4:12 a.m.