Files in aiminy/GOSJ
A R package for GO term enrichment analysis with the flexible bias factor adjustment
DESCRIPTION
Figure/20160213_094438.png
Figure/BiasFromGeneStructure.png
Figure/gene_feature_DE.tiff
Figure/pwFeatureFeature.pdf
Figure/pwFeatureFeature.tiff
Figure/pwfFeatureGL.pdf
Figure/pwfFeatureGL.tiff
Figure/pwfGeneFeature.pdf
Figure/pwfGeneFeature.tiff
Figure/pwfGeneGL.pdf
Figure/pwfGeneGL.tiff
Figure/sjvsGL.png
Figure/sjvsexons.png
Figure/working_flow.png
GOSJ.Rmd
GOSJ.Rproj
GOSJ.pdf
GOSJ_PJ.Rmd
GOSJ_ver_1.0.Rmd
NAMESPACE
R/GOSJ.R
R/callQoRT.R
README.md
Splicing-network.bib
inst/6_Samples_Count_data.csv
inst/bin/bash/ProcessEnsemble2.sh
inst/example.sj.6.samples.csv
inst/gene.model.RData
inst/gene.model.hg38.RData
inst/gene_annotation.txt
inst/genes.RData
inst/genes_table_02052016.csv
inst/genes_table_02052016.txt
man/Combine3Re.Rd
man/CombineCpTftGoGeneID.Rd
man/CompareDEfromGeneWithDEfromFeatures.Rd
man/CompareGOResults.Rd
man/Draw4Cat.Rd
man/Draw4GO.Rd
man/DrawFeature.Rd
man/ExtractGeneIDFromGo.Rd
man/FDR_genewise.Rd
man/GSA.read.gmt.2.Rd
man/GeneBasedAnalysis.Rd
man/GeneWisePvsExonWiseP.Rd
man/GenerateGeneAnno.Rd
man/GetCCBetweenMostSigPadjustSJ.Rd
man/GetDesign.Rd
man/GetMgiSymbolDescription.Rd
man/GetMgiSymbolUsingLocalDataBase.Rd
man/GetPwfUseReformatedData.Rd
man/GetResults4GeneLevel.Rd
man/GetResultsFromJunctionSeq.Rd
man/Get_Over_under_represented_pvalue.Rd
man/Gmt2GeneCat.Rd
man/GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGene.Rd
man/GotermAnalysisUseFeatureDefineDE.Rd
man/GotermAnalysisUseReformatedData.Rd
man/JS.perGeneQValue.Rd
man/JS.perGeneQValueExact.Rd
man/JS.perGeneQValueExact.test.Rd
man/LabelGeneBasedFeature.Rd
man/NBsim.Rd
man/OuputGO.Rd
man/OutputCatBasedPwf.Rd
man/OutputFigure.Rd
man/OutputGOBasedDEfromFeatures.Rd
man/OutputGOBasedDEfromFeatures2.Rd
man/OutputGOBasedDEfromFeatures3.Rd
man/OutputGeneWiseTable.Rd
man/PermutattionOfRawData.Rd
man/ProcessCuffLinkResults.Rd
man/ProcessOutputFilesFrom_rMATS.Rd
man/ReformatData.Rd
man/ReformatDataUseTable.Rd
man/SelectFeature.Rd
man/Select_DE_gene_basd_on_Feature.Rd
man/SimulationSJ2DE.Rd
man/UseLogistic2CKBias.Rd
man/UseLogistic2_adDE.Rd
man/UseOtherDataSet.Rd
man/callQoRT.Rd
man/gene2cat.Rd
man/gene2cat2.Rd
man/getDataset.Rd
man/getgo.Rd
man/getgo3.Rd
man/goseq2.Rd
man/list_to_df.Rd
man/makeGeneWiseTable.Rd
man/plotPWF2.Rd
man/readJunctionSeqCounts.Rd
man/reversemapping.Rd
