Description Usage Arguments Examples
Select_DE_gene_based_on_Feature
1 2 | Select_DE_gene_basd_on_Feature(Re.PJ, re.PJ.gene.based, re.rMAT, splicing_type,
cutoff_FC, cutoff_P_value, gene_model, venn_output)
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splicing_type: |
there are 5 splicing types from rMAT, need to choose one |
1 2 3 4 5 6 | Re.PJ.selected.feature.FC.p<-Select_DE_gene_basd_on_Feature(Re.PJ,re.PJ.gene.based,re.rMAT,0.58,0.05,outputfile_DGE_FC_P_geneWise)
dim(Re.PJ.selected.feature.FC.p)
head(Re.PJ.selected.feature.FC.p)
length(which(Re.PJ.selected.feature.FC.p$DE_or_not==1))
Re.PJ.selected.feature.FC.p.check<-Select_DE_gene_basd_on_Feature(Re.PJ,re.PJ.gene.based,re.rMAT,"SE",2,0.05,outputfile_DGE_FC_P_geneWise)
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