Description Usage Arguments Value Examples
View source: R/arseq.ensembl2genename.R
Convert ensembl id's to hugo gene names. The function also reduces multiple transcripts into a single gene by taking the sum of all transcripts.
1 | arseq.ensembl2genename(data, ensemblmirror, species)
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data |
Expression matrix with ensemble id's as the first column |
species |
Only applies to converting ENSEMBL IDs to Gene names (not to enrichment analysis). Species you want to use. To see the different datasets available you can use do: library(biomaRt); followed by mart = useEnsembl('ENSEMBL_MART_ENSEMBL'); followed by listDatasets(mart). Default: 'hsapiens_gene_ensembl'. |
Expression matrix with gene names as the first column
1 2 3 4 | ## Not run:
data <- arseq.ensembl2genename (example_data)
## End(Not run)
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