arseq.reactome.enrich: Reactome enrichment Analysis

In ajitjohnson/arseq: Automated RNA Sequencing Analysis Pipeline

Description

Performing reactome enrichment analysis on the significantly differentially expressed genes.

Usage

arseq.reactome.enrich(
  deg,
  Padj = 0.05,
  plot = FALSE,
  save.plot = FALSE,
  save.dir = getwd()
)

Arguments

deg	Differentially expressed genes dataframe returned by DESeq2 analysis
Padj	Numeric. Adjusted P Value cut off to define the differentially expressed genes. Default = 0.05

Value

Enrichment dataframe

Examples

## Not run: 
reactome.enrich <- arseq.go.enrich (example_deg)

## End(Not run)

ajitjohnson/arseq documentation built on Oct. 28, 2021, 3:53 a.m.