arseq.gsea.preprocess: GSEA pre-processing step
In ajitjohnson/arseq: Automated RNA Sequencing Analysis Pipeline
Description
Usage
Arguments
Value
Examples
View source: R/arseq.gsea.preprocess.R
Description
Function takes in the differentially expressed genes from DESEq2 and produces a ranked list for GSEA.
Usage
1
Arguments
deg
Differentially expressed genes dataframe returned by DESeq2 analysis.
Value
ranked list of genes.
Examples
1
ranked.list <- arseq.gsea.preprocess (deg=example_deg)
ajitjohnson/arseq documentation built on Oct. 28, 2021, 3:53 a.m.
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Description Usage Arguments Value Examples
View source: R/arseq.gsea.preprocess.R
Description
Function takes in the differentially expressed genes from DESEq2 and produces a ranked list for GSEA.
Usage
1 |
Arguments
deg |
Differentially expressed genes dataframe returned by DESeq2 analysis. |
Value
ranked list of genes.
Examples
1 | ranked.list <- arseq.gsea.preprocess (deg=example_deg)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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