arseq.mds.plot: Multidimensional scaling (MDS) Analysis

In ajitjohnson/arseq: Automated RNA Sequencing Analysis Pipeline

Description

Plots the Multidimensional scaling (MDS) factors.

Usage

arseq.mds.plot(dds, intgroup = "arseq.group")

Arguments

dds	DESeq2 object
intgroup	interesting groups: a character vector of names in colData(x) to use for grouping.

Value

ggplot of the two selected principal components

Examples

## Not run: 
mds.plot <- arseq.mds.plot (example_dds, intgroup="treatment")

## End(Not run)

ajitjohnson/arseq documentation built on Oct. 28, 2021, 3:53 a.m.