arseq.go.enrich: Gene Ontology (GO) term enrichment
In ajitjohnson/arseq: Automated RNA Sequencing Analysis Pipeline
Description
Usage
Arguments
Value
Examples
View source: R/arseq.go.enrich.R
Description
Performing GO term enrichment analysis on the significantly differentially expressed genes.
Usage
1
arseq.go.enrich(deg, Padj = 0.05)
Arguments
deg
Differentially expressed genes dataframe returned by DESeq2 analysis
Padj
Numeric. Adjusted P Value cut off to define the differentially expressed genes. Default = 0.05
Value
Enrichment dataframe
Examples
1
2
3
4
## Not run:
go.enrich <- arseq.go.enrich (example_deg)
## End(Not run)
ajitjohnson/arseq documentation built on Oct. 28, 2021, 3:53 a.m.
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Description Usage Arguments Value Examples
View source: R/arseq.go.enrich.R
Description
Performing GO term enrichment analysis on the significantly differentially expressed genes.
Usage
1 | arseq.go.enrich(deg, Padj = 0.05)
|
Arguments
deg |
Differentially expressed genes dataframe returned by DESeq2 analysis |
Padj |
Numeric. Adjusted P Value cut off to define the differentially expressed genes. Default = 0.05 |
Value
Enrichment dataframe
Examples
1 2 3 4 | ## Not run:
go.enrich <- arseq.go.enrich (example_deg)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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