Description Usage Arguments Value
Cluster BAF values using given cluster centers, helper function
1 | clusterBAF(mybaf, margin.dup = 0.05, margin.het = 0.1, margin.nh = 0.17)
|
mybaf |
The input data table collated with readSiftInput for individual CNV and sample in "data". |
margin.dup |
A margin value around dup clusters AAB or ABB (0.33 and 0.66). Default is 0.05. |
margin.het |
A margin value around heterozygous AB cluster (0.5). Default is 0.1. |
margin.nh |
A margin value around homozygous AA or BB clusters (0 and 1). Default is 0.17 |
A data table with counts and fractions of probes in each cluster.
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