writeSeecite: Write the CNV files with SeeCiTe assessment and all summary...

Description Usage Arguments Value

View source: R/writeSeecite.R

Description

Write the CNV files with SeeCiTe assessment and all summary metrics in txt, plink and bed formats

Usage

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writeSeecite(
  classified_data,
  output_dir,
  dataset,
  subset_nprobes = NULL,
  subset_length = NULL
)

Arguments

classified_data

classified_data A table with final classifications, offspring-centered. Output of classifyTrios.

output_dir

output_dir Folder in which to write the files.

dataset

dataset Dataset string to use in file naming.

subset_nprobes

Only output the CNVs containing that many or more probes

subset_length

Only output the CNVs of the given legth (in bp) or longer

Value

No value returned. Writes files into a given folder.


aksenia/SeeCiTe documentation built on Jan. 19, 2021, 12:35 a.m.