plotCohort: Write the pdf files with the visualisations of local CNV SNP...
In aksenia/SeeCiTe: Assess the quality of and visualize array CNV callset for trios

Write the pdf files with the visualisations of local CNV SNP data for each trio in the data

plotCohort(
  main_data,
  sifted_data,
  classified_data,
  output_dir,
  dataset,
  mono_marker = T,
  subset_nprobes = NULL,
  subset_length = NULL,
  single = FALSE
)

`main_data`	A list holding input data with one obligatory table "data" and two optional "qcsum" and "merge" output of readInputs
`sifted_data`	A table with summary statistis per individual in trio, output of runAnalyzeSignal
`classified_data`	A table with final classifications, offspring-centered. Output of classifyTrios
`output_dir`	Folder in which to write the plot files
`dataset`	Dataset string to use in file naming
`mono_marker`	(TRUE/FALSE) If the array contains non-polymorphic markers with BAF>1, do not plot these. TRUE by default
`subset_nprobes`	Only plot the CNVs containing that many or more probes
`subset_length`	Only plot the CNVs of the given legth (in bp) or longer
`single`	Plot cohort of independent single samples