runAnalyzeSignal: A wrapper around analyzeSignalConcordance(Single) function to...
Description Usage Arguments Value
View source: R/runAnalyzeSignal.R
Description
A wrapper around analyzeSignalConcordance(Single) function to run for a cohort of trios (or singles)
Usage
1 | runAnalyzeSignal(input_data, args, use_cache = FALSE, single = FALSE)
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Arguments
input_data |
The input data table ("data") collated with readInputs. |
args |
Global arguments for the dataset analysis run. |
use_cache |
Use pre-calculated object from previous runs which is written every time the function is run into the folder defined by "cache_id" in args. This analysis takes a while on a large dataset. If it is necessary to re-run from scratch set this argument to FALSE. Default is FALSE. |
single |
Use simplified single samples mode instead of a trio. |
Value
A data table with SeeCiTe preparation analysis for all trios and CNVs in the input.
