plotRawTrio: Visualize local CNV SNP data and key summary statistics for a...
In aksenia/SeeCiTe: Assess the quality of and visualize array CNV callset for trios

Visualize local CNV SNP data and key summary statistics for a trio

plotRawTrio(
  input_data,
  sifted_data,
  print_title = TRUE,
  penn_qcsum = NULL,
  mono_marker = TRUE,
  merge_trace = NULL
)

`input_data`	Data slot of an object read with readInputs, for a single CNV and individual
`sifted_data`	Output of runAnalyzeSignal for the input data
`print_title`	Print detailed summary statistics in a plot header. Default is TRUE.
`penn_qcsum`	Table with PennCNV QC summaries stored in "qcsum" by readInputs if supplied. Will add global LRR_SD and WF values if present. Default is NULL.
`mono_marker`	(TRUE/FALSE) If the array contains non-polymorphic markers with BAF>1, do not plot these. TRUE by default.
`merge_trace`	Table in a custom format with original PennCNV trio status and merging statistics.