API for alexjgriffith/mulcal
To facilitate the analysis of multiple ChIP-Seq data sets

Global functions
IUPACtoBase Man page Source code
PWMtoCons Man page Source code
altPCA Source code
anotatePaste Source code
ascore Man page Source code
ascoreSeperation Man page Source code
ascoreWeighting Source code
batchscore Man page Source code
breakDownName Source code
buildAnotations Man page Source code
buildRegions Source code
cdf Source code
collapse Source code
collect Source code
combinations Man page Source code
compliment Man page Source code
consenusIUPAC Man page Source code
convertChroms Man page Source code
exonsfromGenome Man page Source code
flattenHeights Source code
geneAssoc Man page Source code
geneAssocFlip Man page Source code
geneAssocFlipAux Man page Source code
geneAssociation Man page Source code
genomeDomains Man page Source code
genomicRegions Man page Source code
geometricScore Man page Source code
getData Man page Source code
getDistance Source code
getFrameChar Source code
getHeights Man page Source code
getMin Man page Source code
getMotifs Source code
getPileUp Man page Source code
getScore Source code
hcTest Man page Source code
heightHist Man page Source code
hg19Order Source code
hg19Sort Man page Source code
histVisualize Man page Source code
histWrapper Man page Source code
homerWrapper Man page Source code
htmlDoc Man page Source code
htmlGenerateMain Man page Source code
htmlImage Man page Source code
htmlTable Man page Source code
htmlTags Man page Source code
imageList Source code
interClass Source code
is.even Source code
is.odd Source code
is.prime Source code
lcollapse Source code
leneAssoc Man page Source code
loadBedFile Man page Source code
loadData Source code
loadHeightFile Source code
loadPWM Man page Source code
locHist Man page Source code
locHist2 Source code
member Man page Source code
memberWrapper Man page Source code
minGene Man page Source code
modulous Source code
motifHist Man page Source code
motifScoreFunction Man page Source code
motifString Man page Source code
motifTest Man page Source code
motifs2View Man page Source code
motifsFromPCA Man page Source code
mulcal Man page
mulcal-package Man page
nearSummit Source code
nearestGene Man page Source code
numberIntersect Man page Source code
outputFile Man page Source code
partialSigMatrix Man page Source code
pcaAnalysis Man page Source code
pcaAnalysisTest Man page Source code
pdf Source code
peakGeneRegions Man page Source code
pileUp Man page Source code
plotBox Source code
plotHist Source code
plotPCs Source code
plotScatter Source code
prepareTable Source code
printFasta Source code
qn Source code
quick2motifs Source code
rankChroms Man page Source code
rnaSeqAnalysis Source code
rotateList Man page Source code
saveData Source code
saveMotifFile Source code
scoreList Man page Source code Source code
sequenceGen Source code
sigMatrix Source code
splitBlist Man page Source code
stackedContrib Man page Source code
stackedContrib2 Man page Source code
standPCAPrep Source code
subset.nestedList Man page Source code
tags Man page Source code
testTags Man page Source code
testZero Man page Source code
windowing Source code
windowing.data.frame Source code
windowing.vector Source code
zeroWithinWidth Source code
alexjgriffith/mulcal documentation built on June 3, 2017, 3:56 p.m.