motifsFromPCA: motifsFromPCA

In alexjgriffith/mulcal: To facilitate the analysis of multiple ChIP-Seq data sets

Description

motifsFromPCA

Usage

motifsFromPCA(Sequences, data, pc, location,
  directory = "~/Masters/mulcal/inst/data/", title = paste(directory,
  paste(apply(cbind(pc, location), 1, function(x) paste(x, collapse = "_")),
  collapse = "_"), sep = ""))

Examples

l<-mapply(function(a,b,c){
   motifsFromPCA(Sequences,data,a,b,title=c)
},
list(1,1,3,c(3,5),c(3,7),c(3,7),7),
list("top","bottom","top",c("top","top"),c("top","bottom"),c("top","bottom"),"top"),
paste("~/Masters/mulcal/inst/data/",list("normal","abnormal","ecfc","other","hspc","meka","diff"),".pwm",sep=""))

l<-motifsFromPCA(Sequences ,data,c(1,2,3),c("top","top","bottom"))

alexjgriffith/mulcal documentation built on May 10, 2019, 8:53 a.m.