Files in alexjgriffith/mulcal
To facilitate the analysis of multiple ChIP-Seq data sets
.Rbuildignore
.Rinstignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/contributions.r
R/gene-assoc.r
R/heights.r
R/html.r
R/htmlGenerate.r
R/motifAnalysis.r
R/motifMatrix.r
R/pcaAnalysis.r
R/pkgname.R
R/rnaSeqAnalysis.r
R/tags.r
R/utils.r
README.md
inst/scripts/clusterEx.r
inst/scripts/full-run.r
inst/scripts/functions.r
inst/scripts/garbageFunctions.r
inst/scripts/gene-scripts.r
inst/scripts/height-scripts.r
inst/scripts/motifRelativeDistance.r
inst/scripts/possible-outliers.r
inst/scripts/stackedCrontrib-script.r
inst/scripts/venn.r
inst/scripts/workspace.r
man-roxygen/authorTemplate.R
man/IUPACtoBase.Rd
man/PWMtoCons.Rd
man/ascore.Rd
man/ascoreSeperation.Rd
man/batchscore.Rd
man/buildAnotations.Rd
man/combinations.Rd
man/compliment.Rd
man/consenusIUPAC.Rd
man/convertChroms.Rd
man/exonsfromGenome.Rd
man/geneAssoc.Rd
man/geneAssocFlip.Rd
man/geneAssocFlipAux.Rd
man/geneAssociation.Rd
man/genomeDomains.Rd
man/genomicRegions.Rd
man/geometricScore.Rd
man/getData.Rd
man/getHeights.Rd
man/getMin.Rd
man/getPileUp.Rd
man/hcTest.Rd
man/heightHist.Rd
man/hg19Sort.Rd
man/histVisualize.Rd
man/histWrapper.Rd
man/homerWrapper.Rd
man/htmlDoc.Rd
man/htmlGenerateMain.Rd
man/htmlImage.Rd
man/htmlTable.Rd
man/htmlTags.Rd
man/leneAssoc.Rd
man/loadBedFile.Rd
man/loadPWM.Rd
man/locHist.Rd
man/member.Rd
man/memberWrapper.Rd
man/minGene.Rd
man/motifHist.Rd
man/motifScoreFunction.Rd
man/motifString.Rd
man/motifTest.Rd
man/motifs2View.Rd
man/motifsFromPCA.Rd
man/mulcal.Rd
man/nearestGene.Rd
man/numberIntersect.Rd
man/outputFile.Rd
man/partialSigMatrix.Rd
man/pcaAnalysis.Rd
man/pcaAnalysisTest.Rd
man/peakGeneRegions.Rd
man/pileUp.Rd
man/rankChroms.Rd
man/rotateList.Rd
man/scoreList.Rd
man/splitBlist.Rd
man/stackedContrib.Rd
man/stackedContrib2.Rd
man/subset.nestedList.Rd
man/tags.Rd
man/testTags.Rd
man/testZero.Rd
src/hg19Height.c
src/hg19Height.h
vignettes/vignette.Rmd
