Man pages for alexjgriffith/mulcal
To facilitate the analysis of multiple ChIP-Seq data sets

ascoreAlpha Score
ascoreSeperationThe Processing of PC values A utility designed to help...
batchscoreBatch alpha score seperation Apply a serise of options to...
buildAnotationsBuild Anotations
combinationsCombinations
complimentreverse compliment
consenusIUPACConsensus IUPAC
convertChromsconvertChroms
exonsfromGenomeExons from Genome
geneAssocGene Assoc
geneAssocFlipGene Assoc Flip
geneAssocFlipAuxGene Assoc Flip Aux
geneAssociationGene Association
genomeDomainsGenomic Regions
genomicRegionsGenomic Regions
geometricScoregeometric score value
getDatagetData
getHeightsGet Heights
getMinGet Min will return the single value if there is only a...
getPileUpgetPileUp
hcTestsome hierarchichal clustring Tests
heightHistHeight Histrogram A plotting tool for histograms, Requires...
hg19Sorthg19Sort
histVisualizeVisualize batches of height data
histWrapperHistogram Wrapper
homerWrapperHomer Wrapper
htmlDochtml Doc A minamilistic compelation of functions for the...
htmlGenerateMainhtml GenearateMain Generatates an html file to visualize...
htmlImagehtml Image
htmlTablehtml Table
htmlTagshtmlTags
IUPACtoBaseTurn IUPAC lables into basic neucleotides
leneAssoclene Assoc parallel gene assoc
loadBedFileloadBedFile
loadPWMLoad PWM This utiltiy is designed to load several PWM formats...
locHistLocation Histogram A plotting tool for histograms, Requires...
membermember
memberWrapperMember Wrapper Ment for bed data where the member is found in...
minGeneMin Gene
motifHistMotif histogram
motifs2ViewMotifs Two View
motifScoreFunctionPrelim socre function
motifsFromPCAmotifsFromPCA
motifStringMotif String
motifTestMotif Testing
mulcalCompare multiple ChIP data sets across experimental...
nearestGeneNearest Gene
numberIntersectIntersect Count
outputFileoutputFile
partialSigMatrixPartialSigMatrix
pcaAnalysisPrinciple Componenet Analysis
pcaAnalysisTestPrinciple Componenet Analysis Test
peakGeneRegionsPeak Gene Regions
pileUpPileUp
PWMtoConsPWM to Consensus Motif
rankChromsrankChroms
rotateListRotate List
scoreListScore List
splitBlistSplit by List
stackedContribStacked Contribution
stackedContrib2Stacked Contribution
subset.nestedListSubset nestedList
tagstags
testTagstestTags
testZerotestZero
alexjgriffith/mulcal documentation built on June 3, 2017, 3:56 p.m.