Man pages for alexjgriffith/mulcal
To facilitate the analysis of multiple ChIP-Seq data sets
| ascore | Alpha Score |
| ascoreSeperation | The Processing of PC values A utility designed to help... |
| batchscore | Batch alpha score seperation Apply a serise of options to... |
| buildAnotations | Build Anotations |
| combinations | Combinations |
| compliment | reverse compliment |
| consenusIUPAC | Consensus IUPAC |
| convertChroms | convertChroms |
| exonsfromGenome | Exons from Genome |
| geneAssoc | Gene Assoc |
| geneAssocFlip | Gene Assoc Flip |
| geneAssocFlipAux | Gene Assoc Flip Aux |
| geneAssociation | Gene Association |
| genomeDomains | Genomic Regions |
| genomicRegions | Genomic Regions |
| geometricScore | geometric score value |
| getData | getData |
| getHeights | Get Heights |
| getMin | Get Min will return the single value if there is only a... |
| getPileUp | getPileUp |
| hcTest | some hierarchichal clustring Tests |
| heightHist | Height Histrogram A plotting tool for histograms, Requires... |
| hg19Sort | hg19Sort |
| histVisualize | Visualize batches of height data |
| histWrapper | Histogram Wrapper |
| homerWrapper | Homer Wrapper |
| htmlDoc | html Doc A minamilistic compelation of functions for the... |
| htmlGenerateMain | html GenearateMain Generatates an html file to visualize... |
| htmlImage | html Image |
| htmlTable | html Table |
| htmlTags | htmlTags |
| IUPACtoBase | Turn IUPAC lables into basic neucleotides |
| leneAssoc | lene Assoc parallel gene assoc |
| loadBedFile | loadBedFile |
| loadPWM | Load PWM This utiltiy is designed to load several PWM formats... |
| locHist | Location Histogram A plotting tool for histograms, Requires... |
| member | member |
| memberWrapper | Member Wrapper Ment for bed data where the member is found in... |
| minGene | Min Gene |
| motifHist | Motif histogram |
| motifs2View | Motifs Two View |
| motifScoreFunction | Prelim socre function |
| motifsFromPCA | motifsFromPCA |
| motifString | Motif String |
| motifTest | Motif Testing |
| mulcal | Compare multiple ChIP data sets across experimental... |
| nearestGene | Nearest Gene |
| numberIntersect | Intersect Count |
| outputFile | outputFile |
| partialSigMatrix | PartialSigMatrix |
| pcaAnalysis | Principle Componenet Analysis |
| pcaAnalysisTest | Principle Componenet Analysis Test |
| peakGeneRegions | Peak Gene Regions |
| pileUp | PileUp |
| PWMtoCons | PWM to Consensus Motif |
| rankChroms | rankChroms |
| rotateList | Rotate List |
| scoreList | Score List |
| splitBlist | Split by List |
| stackedContrib | Stacked Contribution |
| stackedContrib2 | Stacked Contribution |
| subset.nestedList | Subset nestedList |
| tags | tags |
| testTags | testTags |
| testZero | testZero |
